Merge pull request #1173 from iBotPeaches/major/remove-smalidebugging

Removes SmaliDebugging

.gitmodules

@@ -1,3 +0,0 @@
-[submodule "smali"]
-	path = smali
-	url = https://github.com/JesusFreke/smali.git

.travis.yml

@@ -1,8 +1,6 @@
 env:
    - TERM=dumb
 language: java
-git:
-  submodules: false
 jdk:
   - openjdk7
   - oraclejdk7
@@ -21,9 +19,7 @@ before_install:
   - git config --global user.name "Travis CI Bot"
   - sudo apt-get update -qq
   - sudo apt-get install -qq libstdc++6:i386 lib32z1 expect
-  - sed -i 's/git@github.com:/https:\/\/github.com\//' .gitmodules
   - git submodule update --init --recursive
-install: ./gradlew applyPatches
 script: ./gradlew build fatJar proguard
 branches:
   only:

LICENSE

@@ -205,6 +205,3 @@ released under the following license:
    See the License for the specific language governing permissions and
    limitations under the License.
 *******************************************************************************
-
-The sub project (brut.apktool.smali) is a clone of the smali project. Its
-license can be found at brut.apktool.smali/NOTICE-SMALI

brut.apktool/apktool-cli/src/main/java/brut/apktool/Main.java

@@ -114,10 +114,8 @@ public class Main {
             decoder.setDecodeSources(ApkDecoder.DECODE_SOURCES_NONE);
         }
         if (cli.hasOption("d") || cli.hasOption("debug")) {
-            decoder.setDebugMode(true);
+            System.err.println("SmaliDebugging has been removed in 2.1.0 onward. Please see: https://github.com/iBotPeaches/Apktool/issues/1061");
-        }
+            System.exit(1);
-        if (cli.hasOption("debug-line-prefix")) {
-            decoder.setDebugLinePrefix(cli.getOptionValue("debug-line-prefix"));
         }
         if (cli.hasOption("b") || cli.hasOption("no-debug-info")) {
             decoder.setBaksmaliDebugMode(false);
@@ -201,7 +199,8 @@ public class Main {
             apkOptions.forceBuildAll = true;
         }
         if (cli.hasOption("d") || cli.hasOption("debug")) {
-            apkOptions.debugMode = true;
+            System.err.println("SmaliDebugging has been removed in 2.1.0 onward. Please see: https://github.com/iBotPeaches/Apktool/issues/1061");
+            System.exit(1);
         }
         if (cli.hasOption("v") || cli.hasOption("verbose")) {
             apkOptions.verbose = true;
@@ -273,19 +272,13 @@ public class Main {
                 .create("r");
 
         Option debugDecOption = OptionBuilder.withLongOpt("debug")
-                .withDescription("Decode in debug mode. Check project page for more info.")
+                .withDescription("REMOVED (DOES NOT WORK): Decode in debug mode.")
                 .create("d");
 
         Option analysisOption = OptionBuilder.withLongOpt("match-original")
                 .withDescription("Keeps files to closest to original as possible. Prevents rebuild.")
                 .create("m");
 
-        Option debugLinePrefix = OptionBuilder.withLongOpt("debug-line-prefix")
-                .withDescription("Smali line prefix when decoding in debug mode. Default is \"a=0;// \".")
-                .hasArg(true)
-                .withArgName("prefix")
-                .create();
-
         Option apiLevelOption = OptionBuilder.withLongOpt("api")
                 .withDescription("The numeric api-level of the file to generate, e.g. 14 for ICS.")
                 .hasArg(true)
@@ -369,7 +362,6 @@ public class Main {
 
         // check for advance mode
         if (isAdvanceMode()) {
-            DecodeOptions.addOption(debugLinePrefix);
             DecodeOptions.addOption(debugDecOption);
             DecodeOptions.addOption(noDbgOption);
             DecodeOptions.addOption(keepResOption);
@@ -416,7 +408,6 @@ public class Main {
             allOptions.addOption((Option)op);
         }
         allOptions.addOption(analysisOption);
-        allOptions.addOption(debugLinePrefix);
         allOptions.addOption(debugDecOption);
         allOptions.addOption(noDbgOption);
         allOptions.addOption(keepResOption);

brut.apktool/apktool-lib/build.gradle

@@ -36,10 +36,8 @@ dependencies {
     compile project(':brut.j.dir'),
             project(':brut.j.util'),
             project(':brut.j.common'),
-            project(':brut.apktool.smali:util'),
+            depends.baksmali,
-            project(':brut.apktool.smali:dexlib2'),
+            depends.smali,
-            project(':brut.apktool.smali:baksmali'),
-            project(':brut.apktool.smali:smali'),
             depends.snakeyaml,
             depends.xmlpull,
             depends.guava,

brut.apktool/apktool-lib/src/main/java/brut/androlib/Androlib.java

@@ -16,7 +16,6 @@
 
 package brut.androlib;
 
-import brut.androlib.java.AndrolibJava;
 import brut.androlib.meta.MetaInfo;
 import brut.androlib.meta.UsesFramework;
 import brut.androlib.res.AndrolibResources;
@@ -80,8 +79,8 @@ public class Androlib {
         }
     }
 
-    public void decodeSourcesSmali(File apkFile, File outDir, String filename, boolean debug, String debugLinePrefix,
+    public void decodeSourcesSmali(File apkFile, File outDir, String filename, boolean bakdeb, int api)
-                                   boolean bakdeb, int api) throws AndrolibException {
+            throws AndrolibException {
         try {
             File smaliDir;
             if (filename.equalsIgnoreCase("classes.dex")) {
@@ -92,18 +91,12 @@ public class Androlib {
             OS.rmdir(smaliDir);
             smaliDir.mkdirs();
             LOGGER.info("Baksmaling " + filename + "...");
-            SmaliDecoder.decode(apkFile, smaliDir, filename, debug, debugLinePrefix, bakdeb, api);
+            SmaliDecoder.decode(apkFile, smaliDir, filename, bakdeb, api);
         } catch (BrutException ex) {
             throw new AndrolibException(ex);
         }
     }
 
-    public void decodeSourcesJava(ExtFile apkFile, File outDir, boolean debug)
-            throws AndrolibException {
-        LOGGER.info("Decoding Java sources...");
-        new AndrolibJava().decode(apkFile, outDir);
-    }
-
     public void decodeManifestRaw(ExtFile apkFile, File outDir)
             throws AndrolibException {
         try {
@@ -299,9 +292,7 @@ public class Androlib {
 
     public void buildSources(File appDir)
             throws AndrolibException {
-        if (!buildSourcesRaw(appDir, "classes.dex")
+        if (!buildSourcesRaw(appDir, "classes.dex") && !buildSourcesSmali(appDir, "smali", "classes.dex")) {
-                && !buildSourcesSmali(appDir, "smali", "classes.dex")
-                && !buildSourcesJava(appDir)) {
             LOGGER.warning("Could not find sources");
         }
     }
@@ -316,9 +307,7 @@ public class Androlib {
                 if (name.startsWith("smali_")) {
                     String filename = name.substring(name.indexOf("_") + 1) + ".dex";
 
-                    if (!buildSourcesRaw(appDir, filename)
+                    if (!buildSourcesRaw(appDir, filename) && !buildSourcesSmali(appDir, name, filename)) {
-                            && !buildSourcesSmali(appDir, name, filename)
-                            && !buildSourcesJava(appDir)) {
                         LOGGER.warning("Could not find sources");
                     }
                 }
@@ -372,25 +361,7 @@ public class Androlib {
         if (apkOptions.forceBuildAll || isModified(smaliDir, dex)) {
             LOGGER.info("Smaling " + folder + " folder into " + filename +"...");
             dex.delete();
-            SmaliBuilder.build(smaliDir, dex, apkOptions.debugMode);
+            SmaliBuilder.build(smaliDir, dex);
-        }
-        return true;
-    }
-
-    public boolean buildSourcesJava(File appDir)
-            throws AndrolibException {
-        File javaDir = new File(appDir, "src");
-        if (!javaDir.exists()) {
-            return false;
-        }
-        File dex = new File(appDir, APK_DIRNAME + "/classes.dex");
-        if (! apkOptions.forceBuildAll) {
-            LOGGER.info("Checking whether sources has changed...");
-        }
-        if (apkOptions.forceBuildAll || isModified(javaDir, dex)) {
-            LOGGER.info("Building java sources...");
-            dex.delete();
-            new AndrolibJava().build(javaDir, dex);
         }
         return true;
     }
@@ -487,10 +458,6 @@ public class Androlib {
 
             File apkDir = new File(appDir, APK_DIRNAME);
 
-            if (apkOptions.debugMode) {
-                ResXmlPatcher.removeApplicationDebugTag(new File(apkDir,"AndroidManifest.xml"));
-            }
-
             if (apkOptions.forceBuildAll || isModified(newFiles(APK_MANIFEST_FILENAMES, appDir),
                     newFiles(APK_MANIFEST_FILENAMES, apkDir))) {
                 LOGGER.info("Building AndroidManifest.xml...");

brut.apktool/apktool-lib/src/main/java/brut/androlib/ApkDecoder.java

@@ -128,10 +128,7 @@ public class ApkDecoder {
                     mAndrolib.decodeSourcesRaw(mApkFile, outDir, "classes.dex");
                     break;
                 case DECODE_SOURCES_SMALI:
-                    mAndrolib.decodeSourcesSmali(mApkFile, outDir, "classes.dex", mDebug, mDebugLinePrefix, mBakDeb, mApi);
+                    mAndrolib.decodeSourcesSmali(mApkFile, outDir, "classes.dex", mBakDeb, mApi);
-                    break;
-                case DECODE_SOURCES_JAVA:
-                    mAndrolib.decodeSourcesJava(mApkFile, outDir, mDebug);
                     break;
             }
         }
@@ -147,10 +144,7 @@ public class ApkDecoder {
                                 mAndrolib.decodeSourcesRaw(mApkFile, outDir, file);
                                 break;
                             case DECODE_SOURCES_SMALI:
-                                mAndrolib.decodeSourcesSmali(mApkFile, outDir, file, mDebug, mDebugLinePrefix, mBakDeb, mApi);
+                                mAndrolib.decodeSourcesSmali(mApkFile, outDir, file, mBakDeb, mApi);
-                                break;
-                            case DECODE_SOURCES_JAVA:
-                                mAndrolib.decodeSourcesJava(mApkFile, outDir, mDebug);
                                 break;
                         }
                     }
@@ -167,7 +161,7 @@ public class ApkDecoder {
     }
 
     public void setDecodeSources(short mode) throws AndrolibException {
-        if (mode != DECODE_SOURCES_NONE && mode != DECODE_SOURCES_SMALI && mode != DECODE_SOURCES_JAVA) {
+        if (mode != DECODE_SOURCES_NONE && mode != DECODE_SOURCES_SMALI) {
             throw new AndrolibException("Invalid decode sources mode: " + mode);
         }
         mDecodeSources = mode;
@@ -180,11 +174,6 @@ public class ApkDecoder {
         mDecodeResources = mode;
     }
 
-    public void setDebugMode(boolean debug) {
-        LOGGER.warning("SmaliDebugging has been deprecated. It will be removed in Apktool 2.1 - https://github.com/iBotPeaches/Apktool/issues/1061");
-        mDebug = debug;
-    }
-
     public void setAnalysisMode(boolean mode, boolean pass) throws AndrolibException{
         mAnalysisMode = mode;
 
@@ -208,10 +197,6 @@ public class ApkDecoder {
         }
     }
 
-    public void setDebugLinePrefix(String debugLinePrefix) {
-        mDebugLinePrefix = debugLinePrefix;
-    }
-
     public void setBaksmaliDebugMode(boolean bakdeb) {
         mBakDeb = bakdeb;
     }
@@ -288,7 +273,6 @@ public class ApkDecoder {
 
     public final static short DECODE_SOURCES_NONE = 0x0000;
     public final static short DECODE_SOURCES_SMALI = 0x0001;
-    public final static short DECODE_SOURCES_JAVA = 0x0002;
 
     public final static short DECODE_RESOURCES_NONE = 0x0100;
     public final static short DECODE_RESOURCES_FULL = 0x0101;
@@ -396,8 +380,6 @@ public class ApkDecoder {
     private ResTable mResTable;
     private short mDecodeSources = DECODE_SOURCES_SMALI;
     private short mDecodeResources = DECODE_RESOURCES_FULL;
-    private String mDebugLinePrefix = "a=0;// ";
-    private boolean mDebug = false;
     private boolean mForceDelete = false;
     private boolean mKeepBrokenResources = false;
     private boolean mBakDeb = true;

brut.apktool/apktool-lib/src/main/java/brut/androlib/ApkOptions.java

@@ -19,7 +19,6 @@ import java.util.Collection;
 
 public class ApkOptions {
     public boolean forceBuildAll = false;
-    public boolean debugMode = false;
     public boolean verbose = false;
     public boolean copyOriginalFiles = false;
     public boolean updateFiles = false;

brut.apktool/apktool-lib/src/main/java/brut/androlib/java/AndrolibJava.java

@@ -1,34 +0,0 @@
-/**
- *  Copyright 2014 Ryszard Wiśniewski <brut.alll@gmail.com>
- *
- *  Licensed under the Apache License, Version 2.0 (the "License");
- *  you may not use this file except in compliance with the License.
- *  You may obtain a copy of the License at
- *
- *       http://www.apache.org/licenses/LICENSE-2.0
- *
- *  Unless required by applicable law or agreed to in writing, software
- *  distributed under the License is distributed on an "AS IS" BASIS,
- *  WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
- *  See the License for the specific language governing permissions and
- *  limitations under the License.
- */
-
-package brut.androlib.java;
-
-import brut.androlib.res.util.ExtFile;
-import java.io.File;
-
-/**
- * @author Ryszard Wiśniewski <brut.alll@gmail.com>
- */
-public class AndrolibJava {
-
-	public void decode(ExtFile apkFile, File outDir) {
-		throw new UnsupportedOperationException("Not yet implemented");
-	}
-
-	public void build(File javaDir, File dex) {
-		throw new UnsupportedOperationException("Not yet implemented");
-	}
-}

brut.apktool/apktool-lib/src/main/java/brut/androlib/mod/IndentingWriter.java

@@ -1,29 +0,0 @@
-/**
- *  Copyright 2014 Ryszard Wiśniewski <brut.alll@gmail.com>
- *
- *  Licensed under the Apache License, Version 2.0 (the "License");
- *  you may not use this file except in compliance with the License.
- *  You may obtain a copy of the License at
- *
- *       http://www.apache.org/licenses/LICENSE-2.0
- *
- *  Unless required by applicable law or agreed to in writing, software
- *  distributed under the License is distributed on an "AS IS" BASIS,
- *  WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
- *  See the License for the specific language governing permissions and
- *  limitations under the License.
- */
-
-package brut.androlib.mod;
-
-import java.io.Writer;
-
-/**
- * @author Ryszard Wiśniewski <brut.alll@gmail.com>
- */
-public class IndentingWriter extends org.jf.util.IndentingWriter {
-
-	public IndentingWriter(Writer writer) {
-		super(writer);
-	}
-}

brut.apktool/apktool-lib/src/main/java/brut/androlib/res/AndrolibResources.java

@@ -343,10 +343,6 @@ final public class AndrolibResources {
         if (apkOptions.updateFiles) {
             cmd.add("-u");
         }
-        if (apkOptions.debugMode) { // inject debuggable="true" into manifest
-            cmd.add("--debug-mode");
-        }
-
         // force package id so that some frameworks build with correct id
         // disable if user adds own aapt (can't know if they have this feature)
         if (mPackageId != null && ! customAapt && ! mSharedLibrary) {

brut.apktool/apktool-lib/src/main/java/brut/androlib/res/xml/ResXmlPatcher.java

@@ -40,35 +40,6 @@ import java.io.IOException;
  * @author Connor Tumbleson <connor.tumbleson@gmail.com>
  */
 public final class ResXmlPatcher {
-
-    /**
-     * Removes "debug" tag from file
-     *
-     * @param file AndroidManifest file
-     * @throws AndrolibException
-     */
-    public static void removeApplicationDebugTag(File file) throws AndrolibException {
-        if (file.exists()) {
-            try {
-                Document doc = loadDocument(file);
-                Node application = doc.getElementById("application");
-
-                // load attr
-                NamedNodeMap attr = application.getAttributes();
-                Node debugAttr = attr.getNamedItem("debug");
-
-                // remove application:debug
-                if (debugAttr != null) {
-                    attr.removeNamedItem("debug");
-                }
-
-                saveDocument(file, doc);
-
-            } catch (SAXException | ParserConfigurationException | IOException | TransformerException ignored) {
-            }
-        }
-    }
-
     /**
      * Any @string reference in a <provider> value in AndroidManifest.xml will break on
      * build, thus preventing the application from installing. This is from a bug/error

brut.apktool/apktool-lib/src/main/java/brut/androlib/src/DebugInjector.java

@@ -1,244 +0,0 @@
-/**
- *  Copyright 2014 Ryszard Wiśniewski <brut.alll@gmail.com>
- *
- *  Licensed under the Apache License, Version 2.0 (the "License");
- *  you may not use this file except in compliance with the License.
- *  You may obtain a copy of the License at
- *
- *       http://www.apache.org/licenses/LICENSE-2.0
- *
- *  Unless required by applicable law or agreed to in writing, software
- *  distributed under the License is distributed on an "AS IS" BASIS,
- *  WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
- *  See the License for the specific language governing permissions and
- *  limitations under the License.
- */
-
-package brut.androlib.src;
-
-import brut.androlib.AndrolibException;
-import java.util.*;
-import java.util.regex.Matcher;
-import java.util.regex.Pattern;
-
-/**
- * @author Ryszard Wiśniewski <brut.alll@gmail.com>
- */
-public class DebugInjector {
-
-    private boolean areParamsInjected;
-    private int currParam;
-    private int lastParam;
-
-    public static void inject(ListIterator<String> it, StringBuilder out)
-            throws AndrolibException {
-        new DebugInjector(it, out).inject();
-    }
-
-    private DebugInjector(ListIterator<String> it, StringBuilder out) {
-        mIt = it;
-        mOut = out;
-    }
-
-    private void inject() throws AndrolibException {
-        String definition = nextAndAppend();
-        if (definition.contains(" abstract ")
-                || definition.contains(" native ")) {
-            nextAndAppend();
-            return;
-        }
-        parseParamsNumber(definition);
-
-        boolean end = false;
-        while (!end) {
-            end = step();
-        }
-    }
-
-    private void parseParamsNumber(String definition) throws AndrolibException {
-        int pos = definition.indexOf('(');
-        if (pos == -1) {
-            throw new AndrolibException();
-        }
-        int pos2 = definition.indexOf(')', pos);
-        if (pos2 == -1) {
-            throw new AndrolibException();
-        }
-        String params = definition.substring(pos + 1, pos2);
-
-        currParam = definition.contains(" static ") ? 0 : 1;
-        lastParam = TypeName.listFromInternalName(params).size() + currParam - 1;
-    }
-
-    private void injectRemainingParams() {
-        areParamsInjected = true;
-        while(currParam <= lastParam) {
-            //mOut.append(".param \"p").append(currParam).append("\"\n");
-            currParam++;
-        }
-    }
-
-    private boolean step() {
-        String line = next();
-        if (line.isEmpty()) {
-            return false;
-        }
-
-        switch (line.charAt(0)) {
-            case '#':
-                return processComment(line);
-            case ':':
-                append(line);
-                return false;
-            case '.':
-                return processDirective(line);
-            default:
-                if (! areParamsInjected) {
-                    injectRemainingParams();
-                }
-                return processInstruction(line);
-        }
-    }
-
-    private boolean processComment(String line) {
-        if (mFirstInstruction) {
-            return false;
-        }
-
-        Matcher m = REGISTER_INFO_PATTERN.matcher(line);
-
-        while (m.find()) {
-            String localName = m.group(1);
-            String localType = null;
-            switch (m.group(2)) {
-                case "Reference":
-                case "UninitRef":
-                case "REFERENCE":
-                case "Null":
-                case "UninitThis":
-                    localType = "Ljava/lang/Object;";
-                    break;
-                case "Boolean":
-                    localType = "Z";
-                    break;
-                case "Integer":
-                case "One":
-                case "Unknown":
-                    localType = "I";
-                    break;
-                case "Uninit":
-                case "Conflicted":
-                    if (mInitializedRegisters.remove(localName)) {
-                        mOut.append(".end local ").append(localName).append('\n');
-                    }
-                    continue;
-                case "Short":
-                case "PosShort":
-                    localType = "S";
-                    break;
-                case "Byte":
-                case "PosByte":
-                    localType = "B";
-                    break;
-                case "Char":
-                    localType = "C";
-                    break;
-                case "Float":
-                    localType = "F";
-                    break;
-                case "LongHi":
-                case "LongLo":
-                    localType = "J";
-                    break;
-                case "DoubleHi":
-                case "DoubleLo":
-                    localType = "D";
-                    break;
-                default:
-                    System.err.println(line);
-                    System.err.println(m.group(2));
-                    System.err.println(m.group(3));
-                    assert false;
-            }
-
-            mInitializedRegisters.add(localName);
-            mOut.append(".local ").append(localName).append(", ").append('"')
-                    .append(localName).append('"').append(':').append(localType)
-                    .append('\n');
-        }
-
-        return false;
-    }
-
-    private boolean processDirective(String line) {
-        String line2 = line.substring(1);
-        if (line2.startsWith("line ") || line2.startsWith("local ") || line2.startsWith("end local ")) {
-            return false;
-        }
-        if (line2.equals("prologue")) {
-            if (! areParamsInjected) {
-                injectRemainingParams();
-            }
-            return false;
-        }
-        if (line2.equals("param")) {
-            mOut.append(".param \"p").append(currParam++).append("\"\n");
-            return false;
-        }
-        if (line2.startsWith("param")) {
-            mOut.append(line).append("\n");
-            currParam++;
-            return false;
-        }
-
-        append(line);
-        if (line2.equals("end method")) {
-            return true;
-        }
-        if (line2.startsWith("annotation ") || line2.equals("sparse-switch")
-                || line2.startsWith("packed-switch ")
-                || line2.startsWith("array-data ")) {
-            while (true) {
-                line2 = nextAndAppend();
-                if (line2.startsWith(".end ")) {
-                    break;
-                }
-            }
-        }
-        return false;
-    }
-
-    private boolean processInstruction(String line) {
-        if (mFirstInstruction) {
-            mOut.append(".prologue\n");
-            mFirstInstruction = false;
-        }
-        mOut.append(".line ").append(mIt.nextIndex()).append('\n').append(line)
-                .append('\n');
-
-        return false;
-    }
-
-    private String next() {
-        return mIt.next().split("//", 2)[1].trim();
-    }
-
-    private String nextAndAppend() {
-        String line = next();
-        append(line);
-        return line;
-    }
-
-    private void append(String append) {
-        mOut.append(append).append('\n');
-    }
-
-    private final ListIterator<String> mIt;
-    private final StringBuilder mOut;
-
-    private boolean mFirstInstruction = true;
-    private final Set<String> mInitializedRegisters = new HashSet<String>();
-
-    private static final Pattern REGISTER_INFO_PATTERN = Pattern
-            .compile("((?:p|v)\\d+)=\\(([^,)]+)([^)]*)\\);");
-}

brut.apktool/apktool-lib/src/main/java/brut/androlib/src/SmaliBuilder.java

@@ -21,9 +21,7 @@ import brut.androlib.mod.SmaliMod;
 import brut.androlib.res.util.ExtFile;
 import brut.directory.DirectoryException;
 import java.io.*;
-import java.util.HashMap;
 import java.util.List;
-import java.util.ListIterator;
 import java.util.logging.Logger;
 
 import org.antlr.runtime.RecognitionException;
@@ -36,15 +34,13 @@ import org.jf.dexlib2.writer.io.FileDataStore;
  */
 public class SmaliBuilder {
 
-    public static void build(ExtFile smaliDir, File dexFile, boolean debug)
+    public static void build(ExtFile smaliDir, File dexFile) throws AndrolibException {
-            throws AndrolibException {
+        new SmaliBuilder(smaliDir, dexFile).build();
-        new SmaliBuilder(smaliDir, dexFile, debug).build();
     }
 
-    private SmaliBuilder(ExtFile smaliDir, File dexFile, boolean debug) {
+    private SmaliBuilder(ExtFile smaliDir, File dexFile) {
         mSmaliDir = smaliDir;
         mDexFile = dexFile;
-        mDebug = debug;
     }
 
     private void build() throws AndrolibException {
@@ -84,29 +80,9 @@ public class SmaliBuilder {
         List<String> lines = IOUtils.readLines(inStream);
         inStream.close();
 
-        if (! mDebug) {
+        final String[] linesArray = lines.toArray(new String[0]);
-            final String[] linesArray = lines.toArray(new String[0]);
+        for (int i = 1; i < linesArray.length - 1; i++) {
-            for (int i = 1; i < linesArray.length - 1; i++) {
+            out.append(linesArray[i].split("//", 2)[1]).append('\n');
-                out.append(linesArray[i].split("//", 2)[1]).append('\n');
-            }
-        } else {
-            lines.remove(lines.size() - 1);
-            ListIterator<String> it = lines.listIterator(1);
-
-            out.append(".source \"").append(inFile.getName()).append("\"\n");
-            while (it.hasNext()) {
-                String line = it.next().split("//", 2)[1].trim();
-                if (line.isEmpty() || line.charAt(0) == '#' || line.startsWith(".source")) {
-                    continue;
-                }
-                if (line.startsWith(".method ")) {
-                    it.previous();
-                    DebugInjector.inject(it, out);
-                    continue;
-                }
-
-                out.append(line).append('\n');
-            }
         }
         try {
             if (!SmaliMod.assembleSmaliFile(out.toString(),dexBuilder, false, false, inFile)) {
@@ -119,7 +95,6 @@ public class SmaliBuilder {
 
     private final ExtFile mSmaliDir;
     private final File mDexFile;
-    private final boolean mDebug;
 
     private final static Logger LOGGER = Logger.getLogger(SmaliBuilder.class.getName());
 }

brut.apktool/apktool-lib/src/main/java/brut/androlib/src/SmaliDecoder.java

@@ -20,52 +20,38 @@ import brut.androlib.AndrolibException;
 import org.jf.baksmali.baksmali;
 import org.jf.baksmali.baksmaliOptions;
 import org.jf.dexlib2.DexFileFactory;
-import org.jf.dexlib2.analysis.ClassPath;
 import org.jf.dexlib2.dexbacked.DexBackedDexFile;
 import org.jf.dexlib2.dexbacked.DexBackedOdexFile;
 import org.jf.dexlib2.analysis.InlineMethodResolver;
 
-import java.io.BufferedReader;
-import java.io.BufferedWriter;
 import java.io.File;
 import java.io.IOException;
-import java.nio.charset.Charset;
-import java.nio.file.FileVisitResult;
-import java.nio.file.Files;
-import java.nio.file.Path;
-import java.nio.file.SimpleFileVisitor;
-import java.nio.file.attribute.BasicFileAttributes;
 
 /**
  * @author Ryszard Wiśniewski <brut.alll@gmail.com>
  */
 public class SmaliDecoder {
 
-    public static void decode(File apkFile, File outDir, String dexName, boolean debug, String debugLinePrefix,
+    public static void decode(File apkFile, File outDir, String dexName, boolean bakdeb, int api)
-                              boolean bakdeb, int api) throws AndrolibException {
+            throws AndrolibException {
-        new SmaliDecoder(apkFile, outDir, dexName, debug, debugLinePrefix, bakdeb, api).decode();
+        new SmaliDecoder(apkFile, outDir, dexName, bakdeb, api).decode();
     }
 
-    private SmaliDecoder(File apkFile, File outDir, String dexName, boolean debug, String debugLinePrefix,
+    private SmaliDecoder(File apkFile, File outDir, String dexName, boolean bakdeb, int api) {
-                         boolean bakdeb, int api) {
         mApkFile = apkFile;
-        mOutDir = outDir.toPath();
+        mOutDir  = outDir;
         mDexFile = dexName;
-        mDebug = debug;
+        mBakDeb  = bakdeb;
-        mDebugLinePrefix = debugLinePrefix;
+        mApi     = api;
-        mBakDeb = bakdeb;
-        mApi    = api;
     }
 
     private void decode() throws AndrolibException {
         try {
-            ClassPath.dontLoadClassPath = mDebug;
-
             baksmaliOptions options = new baksmaliOptions();
 
             // options
             options.deodex = false;
-            options.outputDirectory = mOutDir.toAbsolutePath().toString();
+            options.outputDirectory = mOutDir.toString();
             options.noParameterRegisters = false;
             options.useLocalsDirective = true;
             options.useSequentialLabels = true;
@@ -73,21 +59,15 @@ public class SmaliDecoder {
             options.addCodeOffsets = false;
             options.jobs = -1;
             options.noAccessorComments = false;
-            options.registerInfo = (mDebug ? baksmaliOptions.DIFFPRE : 0);
+            options.registerInfo = 0;
             options.ignoreErrors = false;
             options.inlineResolver = null;
             options.checkPackagePrivateAccess = false;
 
             // set jobs automatically
-            if (options.jobs <= 0) {
+            options.jobs = Runtime.getRuntime().availableProcessors();
-                if (mDebug) {
+            if (options.jobs > 6) {
-                    options.jobs = 1;
+                options.jobs = 6;
-                } else {
-                    options.jobs = Runtime.getRuntime().availableProcessors();
-                    if (options.jobs > 6) {
-                        options.jobs = 6;
-                    }
-                }
             }
 
             // create the dex
@@ -102,54 +82,15 @@ public class SmaliDecoder {
                         InlineMethodResolver.createInlineMethodResolver(((DexBackedOdexFile)dexFile).getOdexVersion());
             }
 
-            baksmali.disassembleDexFile(dexFile,options);
+            baksmali.disassembleDexFile(dexFile, options);
-
-            if (mDebug) {
-                Files.walkFileTree(mOutDir, new SmaliFileVisitor());
-            }
         } catch (IOException ex) {
             throw new AndrolibException(ex);
         }
     }
 
     private final File mApkFile;
-    private final Path mOutDir;
+    private final File mOutDir;
-    private final boolean mDebug;
-    private final String mDebugLinePrefix;
     private final String mDexFile;
     private final boolean mBakDeb;
     private final int mApi;
-
-    private class SmaliFileVisitor extends SimpleFileVisitor<Path> {
-        @Override
-        public FileVisitResult visitFile(Path file, BasicFileAttributes attrs) throws IOException {
-            String fileName = file.getFileName().toString();
-            if (! fileName.endsWith(".smali")) {
-                return FileVisitResult.CONTINUE;
-            }
-            fileName = fileName.substring(0, fileName.length() - 6);
-            try (
-                    BufferedReader in = Files.newBufferedReader(file, Charset.defaultCharset());
-                    BufferedWriter out = Files.newBufferedWriter(
-                            file.resolveSibling(fileName + ".java"), Charset.defaultCharset())
-            ) {
-                TypeName type = TypeName.fromPath(mOutDir.relativize(file.resolveSibling(fileName)));
-                out.write("package " + type.package_ + "; class " + type.getName(true, true) + " { void a() { int a;");
-                out.newLine();
-
-                String line;
-                final String debugLinePrefix = mDebugLinePrefix;
-                while ((line = in.readLine()) != null) {
-                    out.write(debugLinePrefix);
-                    out.write(line);
-                    out.newLine();
-                }
-
-                out.write("}}");
-                out.newLine();
-            }
-            Files.delete(file);
-            return FileVisitResult.CONTINUE;
-        }
-    }
 }

brut.apktool/apktool-lib/src/main/java/brut/androlib/src/TypeName.java

@@ -1,212 +0,0 @@
-/**
- *  Copyright 2014 Ryszard Wiśniewski <brut.alll@gmail.com>
- *
- *  Licensed under the Apache License, Version 2.0 (the "License");
- *  you may not use this file except in compliance with the License.
- *  You may obtain a copy of the License at
- *
- *       http://www.apache.org/licenses/LICENSE-2.0
- *
- *  Unless required by applicable law or agreed to in writing, software
- *  distributed under the License is distributed on an "AS IS" BASIS,
- *  WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
- *  See the License for the specific language governing permissions and
- *  limitations under the License.
- */
-
-package brut.androlib.src;
-
-import brut.androlib.AndrolibException;
-import brut.util.Duo;
-import com.google.common.base.Joiner;
-
-import java.io.File;
-import java.nio.file.Path;
-import java.util.ArrayList;
-import java.util.Arrays;
-import java.util.List;
-
-/**
- * @author Ryszard Wiśniewski <brut.alll@gmail.com>
- */
-public class TypeName {
-    public final String package_;
-    public final String type;
-    public final String innerType;
-    public final int array;
-
-    public TypeName(String type, int array) {
-        this(null, type, null, array);
-    }
-
-    public TypeName(String package_, String type, String innerType, int array) {
-        this.package_ = package_;
-        this.type = type;
-        this.innerType = innerType;
-        this.array = array;
-    }
-
-    public String getShortenedName() {
-        return getName("java.lang".equals(package_), isFileOwner());
-    }
-
-    public String getName() {
-        return getName(false, false);
-    }
-
-    public String getName(boolean excludePackage, boolean separateInner) {
-        String name = (package_ == null || excludePackage ? "" : package_ + '.')
-                + type
-                + (innerType != null ? (separateInner ? '$' : '.') + innerType
-                : "");
-        for (int i = 0; i < array; i++) {
-            name += "[]";
-        }
-        return name;
-    }
-
-    public String getJavaFilePath() {
-        return getFilePath(isFileOwner()) + ".java";
-    }
-
-    public String getSmaliFilePath() {
-        return getFilePath(true) + ".smali";
-    }
-
-    public String getFilePath(boolean separateInner) {
-        return package_.replace('.', File.separatorChar) + File.separatorChar
-                + type + (separateInner && isInner() ? "$" + innerType : "");
-    }
-
-    public boolean isInner() {
-        return innerType != null;
-    }
-
-    public boolean isArray() {
-        return array != 0;
-    }
-
-    public boolean isFileOwner() {
-        if (mIsFileOwner == null) {
-            mIsFileOwner = true;
-            if (isInner()) {
-                char c = innerType.charAt(0);
-                if (c < '0' || c > '9') {
-                    mIsFileOwner = false;
-                }
-            }
-        }
-        return mIsFileOwner;
-    }
-
-    @Override
-    public String toString() {
-        return getName();
-    }
-
-    public static TypeName fromInternalName(String internal)
-            throws AndrolibException {
-        Duo<TypeName, Integer> duo = fetchFromInternalName(internal);
-        if (duo.m2 != internal.length()) {
-            throw new AndrolibException("Invalid internal name: " + internal);
-        }
-        return duo.m1;
-    }
-
-    public static List<TypeName> listFromInternalName(String internal)
-            throws AndrolibException {
-        List<TypeName> types = new ArrayList<TypeName>();
-        while (!internal.isEmpty()) {
-            Duo<TypeName, Integer> duo = fetchFromInternalName(internal);
-            types.add(duo.m1);
-            internal = internal.substring(duo.m2);
-        }
-        return types;
-    }
-
-    public static TypeName fromPath(Path path) {
-        List<String> parts = new ArrayList<>(path.getNameCount());
-        for (Path p : path) {
-            parts.add(p.toString());
-        }
-        return fromNameParts(parts, 0);
-    }
-
-    public static TypeName fromNameParts(List<String> parts, int array) {
-        String type = parts.get(parts.size() - 1);
-        parts = parts.subList(0, parts.size() - 1);
-        String innerType = null;
-
-        int pos = type.indexOf('$');
-        if (pos != -1) {
-            innerType = type.substring(pos + 1);
-            type = type.substring(0, pos);
-        }
-        return new TypeName(Joiner.on('.').join(parts), type, innerType, array);
-    }
-
-    public static Duo<TypeName, Integer> fetchFromInternalName(String internal)
-            throws AndrolibException {
-        String origInternal = internal;
-        int array = 0;
-
-        boolean isArray = false;
-        do {
-            if (internal.isEmpty()) {
-                throw new AndrolibException("Invalid internal name: "
-                        + origInternal);
-            }
-            isArray = internal.charAt(0) == '[';
-            if (isArray) {
-                array++;
-                internal = internal.substring(1);
-            }
-        } while (isArray);
-
-        int length = array + 1;
-        String type;
-        switch (internal.charAt(0)) {
-            case 'B':
-                type = "byte";
-                break;
-            case 'C':
-                type = "char";
-                break;
-            case 'D':
-                type = "double";
-                break;
-            case 'F':
-                type = "float";
-                break;
-            case 'I':
-                type = "int";
-                break;
-            case 'J':
-                type = "long";
-                break;
-            case 'S':
-                type = "short";
-                break;
-            case 'Z':
-                type = "boolean";
-                break;
-            case 'V':
-                type = "void";
-                break;
-            case 'L':
-                int pos = internal.indexOf(';');
-                if (pos == -1) {
-                    throw new AndrolibException("Invalid internal name: "
-                            + origInternal);
-                }
-                return new Duo<>(fromNameParts(Arrays.asList(internal.substring(1, pos).split("/")), array), length + pos);
-            default:
-                throw new AndrolibException("Invalid internal name: "
-                        + origInternal);
-        }
-
-        return new Duo<>(new TypeName(null, type, null, array), length);
-    }
-
-    private Boolean mIsFileOwner;
-}

build.gradle

@@ -25,10 +25,6 @@ buildscript {
     }
 }
 
-plugins {
-    id 'net.minecrell.gitpatcher' version '0.7.1'
-}
-
 apply plugin: 'maven'
 apply from: 'gradle/functions.gradle'
 
@@ -78,22 +74,10 @@ build.doFirst {
     }
 }
 
-clean.doFirst {
-    delete "${rootDir}/brut.apktool.smali"
-    println "deleting ${rootDir}/brut.apktool.smali in favor of smali"
-    println "You will need to run applyPatches again, as they have been wiped."
-}
-
 // used for official releases only. Please don't use
 task release {
 }
 
-patches {
-    submodule = 'smali'
-    target = file('brut.apktool.smali')
-    patches = file('gradle/smali-patches')
-}
-
 subprojects {
     apply plugin: 'java'
     apply plugin: 'maven'
@@ -103,6 +87,7 @@ subprojects {
         depends = [
                 antlr: 'org.antlr:antlr:3.5',
                 antlr_runtime: 'org.antlr:antlr-runtime:3.5',
+                baksmali: 'org.smali:baksmali:2.1.1',
                 commons_cli: 'commons-cli:commons-cli:1.2',
                 commons_io: 'commons-io:commons-io:2.4',
                 commons_lang: 'org.apache.commons:commons-lang3:3.1',
@@ -112,6 +97,7 @@ subprojects {
                 junit: 'junit:junit:4.6',
                 proguard_gradle: 'net.sf.proguard:proguard-gradle:5.2.1',
                 snakeyaml: 'org.yaml:snakeyaml:1.12',
+                smali: 'org.smali:smali:2.1.1',
                 xmlpull: 'xpp3:xpp3:1.1.4c',
                 xmlunit: 'xmlunit:xmlunit:1.3',
         ]

gradle/smali-patches/001-baksmali-diffpre.patch

@@ -1,68 +0,0 @@
-From 687b92094889a90a70afc4e153ac24659a7e2beb Mon Sep 17 00:00:00 2001
-From: Connor Tumbleson <connor.tumbleson@gmail.com>
-Date: Wed, 14 Oct 2015 06:08:13 -0500
-Subject: baksmali: added DIFFPRE reg info
-
----
- .../Adaptors/PreInstructionRegisterInfoMethodItem.java | 18 ++++++++++++++++++
- .../src/main/java/org/jf/baksmali/baksmaliOptions.java |  2 ++
- 2 files changed, 20 insertions(+)
-
-diff --git a/baksmali/src/main/java/org/jf/baksmali/Adaptors/PreInstructionRegisterInfoMethodItem.java b/baksmali/src/main/java/org/jf/baksmali/Adaptors/PreInstructionRegisterInfoMethodItem.java
-index f532938..5699cf0 100644
---- a/baksmali/src/main/java/org/jf/baksmali/Adaptors/PreInstructionRegisterInfoMethodItem.java
-+++ b/baksmali/src/main/java/org/jf/baksmali/Adaptors/PreInstructionRegisterInfoMethodItem.java
-@@ -40,6 +40,8 @@ import java.io.IOException;
- import java.util.BitSet;
- 
- public class PreInstructionRegisterInfoMethodItem extends MethodItem {
-+    private static AnalyzedInstruction lastInstruction;
-+
-     private final int registerInfo;
-     @Nonnull private final MethodAnalyzer methodAnalyzer;
-     @Nonnull private final RegisterFormatter registerFormatter;
-@@ -77,6 +79,9 @@ public class PreInstructionRegisterInfoMethodItem extends MethodItem {
-                 if ((registerInfo & baksmaliOptions.ARGS) != 0) {
-                     addArgsRegs(registers);
-                 }
-+                if ((registerInfo & baksmaliOptions.DIFFPRE) != 0) {
-+                    addDiffRegs(registers);
-+                }
-                 if ((registerInfo & baksmaliOptions.MERGE) != 0) {
-                     if (analyzedInstruction.isBeginningInstruction()) {
-                         addParamRegs(registers, registerCount);
-@@ -144,6 +149,19 @@ public class PreInstructionRegisterInfoMethodItem extends MethodItem {
-         }
-     }
- 
-+    private void addDiffRegs(BitSet registers) {
-+        if (! analyzedInstruction.isBeginningInstruction()) {
-+            for (int i = 0; i < analyzedInstruction.getRegisterCount(); i++) {
-+                if (lastInstruction.getPreInstructionRegisterType(i).category !=
-+                        analyzedInstruction.getPreInstructionRegisterType(i).category) {
-+                    registers.set(i);
-+                }
-+            }
-+        }
-+
-+        lastInstruction = analyzedInstruction;
-+    }
-+
-     private void addMergeRegs(BitSet registers, int registerCount) {
-         if (analyzedInstruction.getPredecessorCount() <= 1) {
-             //in the common case of an instruction that only has a single predecessor which is the previous
-diff --git a/baksmali/src/main/java/org/jf/baksmali/baksmaliOptions.java b/baksmali/src/main/java/org/jf/baksmali/baksmaliOptions.java
-index 5dd060f..fc2ffc5 100644
---- a/baksmali/src/main/java/org/jf/baksmali/baksmaliOptions.java
-+++ b/baksmali/src/main/java/org/jf/baksmali/baksmaliOptions.java
-@@ -53,6 +53,8 @@ public class baksmaliOptions {
-     public static final int MERGE = 32;
-     public static final int FULLMERGE = 64;
- 
-+    public static final int DIFFPRE = 128;
-+
-     public int apiLevel = 15;
-     public String outputDirectory = "out";
-     @Nullable public String dexEntry = null;
--- 
-2.1.4

gradle/smali-patches/002-dexlib2-dontloadclasspath.patch

@@ -1,58 +0,0 @@
-From eaa6a9f04b582644a40054532dac3a93c01a5fe7 Mon Sep 17 00:00:00 2001
-From: Connor Tumbleson <connor.tumbleson@gmail.com>
-Date: Wed, 14 Oct 2015 06:09:38 -0500
-Subject: dexlib2: added "dontLoadClassPath"
-
----
- dexlib2/src/main/java/org/jf/dexlib2/analysis/ClassPath.java      | 6 ++++++
- dexlib2/src/main/java/org/jf/dexlib2/analysis/MethodAnalyzer.java | 4 ++--
- 2 files changed, 8 insertions(+), 2 deletions(-)
-
-diff --git a/dexlib2/src/main/java/org/jf/dexlib2/analysis/ClassPath.java b/dexlib2/src/main/java/org/jf/dexlib2/analysis/ClassPath.java
-index 9d0bb2d..513e73f 100644
---- a/dexlib2/src/main/java/org/jf/dexlib2/analysis/ClassPath.java
-+++ b/dexlib2/src/main/java/org/jf/dexlib2/analysis/ClassPath.java
-@@ -58,6 +58,8 @@ import java.util.regex.Matcher;
- import java.util.regex.Pattern;
- 
- public class ClassPath {
-+    public static boolean dontLoadClassPath = false;
-+
-     @Nonnull private final TypeProto unknownClass;
-     @Nonnull private HashMap<String, ClassDef> availableClasses = Maps.newHashMap();
-     private final boolean checkPackagePrivateAccess;
-@@ -171,6 +173,10 @@ public class ClassPath {
- 
-     @Nonnull
-     public ClassDef getClassDef(String type) {
-+        if (dontLoadClassPath) {
-+            throw new UnresolvedClassException("Could not resolve class %s", type);
-+        }
-+
-         ClassDef ret = availableClasses.get(type);
-         if (ret == null) {
-             throw new UnresolvedClassException("Could not resolve class %s", type);
-diff --git a/dexlib2/src/main/java/org/jf/dexlib2/analysis/MethodAnalyzer.java b/dexlib2/src/main/java/org/jf/dexlib2/analysis/MethodAnalyzer.java
-index e634297..d853133 100644
---- a/dexlib2/src/main/java/org/jf/dexlib2/analysis/MethodAnalyzer.java
-+++ b/dexlib2/src/main/java/org/jf/dexlib2/analysis/MethodAnalyzer.java
-@@ -1230,7 +1230,7 @@ public class MethodAnalyzer {
-         ThreeRegisterInstruction instruction = (ThreeRegisterInstruction)analyzedInstruction.instruction;
- 
-         RegisterType arrayRegisterType = analyzedInstruction.getPreInstructionRegisterType(instruction.getRegisterB());
--        if (arrayRegisterType.category != RegisterType.NULL) {
-+        if (! ClassPath.dontLoadClassPath && arrayRegisterType.category != RegisterType.NULL) {
-             if (arrayRegisterType.category != RegisterType.REFERENCE ||
-                     !(arrayRegisterType.type instanceof ArrayProto)) {
-                 throw new AnalysisException("aget-wide used with non-array register: %s", arrayRegisterType.toString());
-@@ -1261,7 +1261,7 @@ public class MethodAnalyzer {
-         ThreeRegisterInstruction instruction = (ThreeRegisterInstruction)analyzedInstruction.instruction;
- 
-         RegisterType arrayRegisterType = analyzedInstruction.getPreInstructionRegisterType(instruction.getRegisterB());
--        if (arrayRegisterType.category != RegisterType.NULL) {
-+        if (! ClassPath.dontLoadClassPath && arrayRegisterType.category != RegisterType.NULL) {
-             if (arrayRegisterType.category != RegisterType.REFERENCE ||
-                     !(arrayRegisterType.type instanceof ArrayProto)) {
-                 throw new AnalysisException("aget-object used with non-array register: %s",
--- 
-2.1.4

gradle/smali-patches/003-baksmali-buildgradle.patch

@@ -1,69 +0,0 @@
-From 3d810d1b2b0f8f08286bf5c4e8d27cbd43ae21ed Mon Sep 17 00:00:00 2001
-From: Connor Tumbleson <connor.tumbleson@gmail.com>
-Date: Wed, 14 Oct 2015 06:15:45 -0500
-Subject: baksmali: add apktool build.gradle changes
-
----
- baksmali/build.gradle | 29 ++++-------------------------
- 1 file changed, 4 insertions(+), 25 deletions(-)
-
-diff --git a/baksmali/build.gradle b/baksmali/build.gradle
-index 4780cd7..59eb352 100644
---- a/baksmali/build.gradle
-+++ b/baksmali/build.gradle
-@@ -39,23 +39,18 @@ buildscript {
- }
- 
- dependencies {
--    compile project(':util')
--    compile project(':dexlib2')
-+    compile project(':brut.apktool.smali:util')
-+    compile project(':brut.apktool.smali:dexlib2')
-     compile depends.commons_cli
-     compile depends.guava
- 
-     testCompile depends.junit
--    testCompile project(':smali')
-+    testCompile project(':brut.apktool.smali:smali')
- }
- 
- processResources.inputs.property('version', version)
- processResources.expand('version': version)
- 
--// This is the jar that gets uploaded to maven
--jar {
--    baseName = 'maven'
--}
--
- // Build a separate jar that contains all dependencies
- task fatJar(type: Jar) {
-     from sourceSets.main.output
-@@ -64,25 +59,9 @@ task fatJar(type: Jar) {
-     manifest {
-         attributes('Main-Class': 'org.jf.baksmali.main')
-     }
--
--    doLast {
--        if (!System.getProperty('os.name').toLowerCase().contains('windows')) {
--            ant.symlink(link: file("${destinationDir}/baksmali.jar"), resource: archivePath, overwrite: true)
--        }
--    }
- }
--tasks.getByPath('build').dependsOn(fatJar)
- 
--uploadArchives {
--    repositories.mavenDeployer {
--        pom.project {
--            description 'baksmali is a disassembler for dalvik bytecode'
--            scm {
--                url 'https://github.com/JesusFreke/smali/tree/master/baksmali'
--            }
--        }
--    }
--}
-+tasks.getByPath('build').dependsOn(fatJar)
- 
- task proguard(type: proguard.gradle.ProGuardTask, dependsOn: fatJar) {
-     def outFile = fatJar.destinationDir.getPath() + '/' + fatJar.baseName + '-' + fatJar.version + '-small' + '.' + fatJar.extension
--- 
-2.1.4

gradle/smali-patches/004-base-buildgradle.patch

@@ -1,142 +0,0 @@
-From 915202a77b6a3d5af044b2ad487f4ce02c2edd7c Mon Sep 17 00:00:00 2001
-From: Connor Tumbleson <connor.tumbleson@gmail.com>
-Date: Wed, 14 Oct 2015 06:16:41 -0500
-Subject: base: add apktool build.gradle changes
-
----
- build.gradle | 97 +-----------------------------------------------------------
- 1 file changed, 1 insertion(+), 96 deletions(-)
-
-diff --git a/build.gradle b/build.gradle
-index 237d30e..36af3a7 100644
---- a/build.gradle
-+++ b/build.gradle
-@@ -38,7 +38,7 @@ def jarVersion = version
- if (!('release' in gradle.startParameter.taskNames)) {
-     def versionSuffix
-     try {
--        def git = org.eclipse.jgit.api.Git.open(file('.'))
-+        def git = org.eclipse.jgit.api.Git.open(file('../.'))
-         def head = git.getRepository().getRef('HEAD')
-         versionSuffix = head.getObjectId().abbreviate(8).name()
- 
-@@ -57,21 +57,8 @@ if (!('release' in gradle.startParameter.taskNames)) {
-     // use something like module-1.2.3-dev.jar for the jar name, rather than the full
-     // module-1.2.3-001afe02-dirty.jar
-     jarVersion = baseVersion + '-dev'
--} else {
--    if (System.env.JDK6_HOME == null && !JavaVersion.current().isJava6()) {
--        throw new InvalidUserDataException("bzzzzzzzt. Release builds must be performed with java 6. " +
--                "Either run gradle with java 6, or define the JDK6_HOME environment variable.")
--    }
--}
--
--// Note: please don't use this. This is strictly for the official releases
--// that are posted on, e.g. the bitbucket download page.
--task release() {
- }
- 
--// The projects that get pushed to maven
--def maven_release_projects = ['smali', 'baksmali', 'dexlib2', 'util']
--
- subprojects {
-     apply plugin: 'java'
-     apply plugin: 'idea'
-@@ -84,19 +71,6 @@ subprojects {
-         }
-     }
- 
--    if (System.env.JDK6_HOME != null) {
--        sourceCompatibility = 1.6
--        targetCompatibility = 1.6
--
--        tasks.withType(JavaCompile) {
--            doFirst {
--                options.fork = true
--                options.bootClasspath = "$System.env.JDK6_HOME/jre/lib/rt.jar"
--                options.bootClasspath += "$File.pathSeparator$System.env.JDK6_HOME/jre/lib/jsse.jar"
--            }
--        }
--    }
--
-     version = parent.version
- 
-     ext {
-@@ -121,75 +95,6 @@ subprojects {
-     repositories {
-         mavenCentral()
-     }
--
--    if (project.name in maven_release_projects) {
--        apply plugin: 'maven'
--        apply plugin: 'signing'
--
--        group = 'org.smali'
--
--        task javadocJar(type: Jar, dependsOn: javadoc) {
--            classifier = 'javadoc'
--            from 'build/docs/javadoc'
--        }
--
--        task sourcesJar(type: Jar) {
--            classifier = 'sources'
--            from sourceSets.main.allJava
--        }
--
--        artifacts {
--            archives javadocJar
--            archives sourcesJar
--        }
--
--        signing {
--            required { gradle.taskGraph.hasTask('uploadArchives') }
--            sign configurations.archives
--        }
--
--        uploadArchives {
--            repositories.mavenDeployer {
--                configuration = configurations.archives
--
--                beforeDeployment { MavenDeployment deployment -> signing.signPom(deployment) }
--
--                if (rootProject.hasProperty('sonatypeUsername') && rootProject.hasProperty('sonatypePassword')) {
--                    repository(url: 'https://oss.sonatype.org/service/local/staging/deploy/maven2/') {
--                        authentication(userName: sonatypeUsername, password: sonatypePassword)
--                    }
--                }
--
--                pom.artifactId = project.name
--
--                pom.project {
--                    name project.name
--                    url 'http://smali.org'
--                    packaging 'jar'
--                    licenses {
--                        license {
--                            name 'The BSD 3-Clause License'
--                            url 'http://opensource.org/licenses/BSD-3-Clause'
--                            distribution 'repo'
--                        }
--                    }
--                    scm {
--                        connection 'scm:git:git://github.com/JesusFreke/smali.git'
--                        developerConnection 'scm:git:git@github.com:JesusFreke/smali.git'
--                    }
--                    developers {
--                        developer {
--                            id 'jesusfreke'
--                            name 'Ben Gruver'
--                            email 'jesusfreke@jesusfreke.com'
--                        }
--                    }
--                }
--            }
--        }
--
--        tasks.getByPath(':release').dependsOn(uploadArchives)
--    }
- }
- 
- buildscript {
--- 
-2.1.4

gradle/smali-patches/005-dexlib2-buildgradle.patch

@@ -1,55 +0,0 @@
-From 88ad24a648ca190e0e39e69fcb9fc9687edb58ec Mon Sep 17 00:00:00 2001
-From: Connor Tumbleson <connor.tumbleson@gmail.com>
-Date: Wed, 14 Oct 2015 06:17:13 -0500
-Subject: dexlib2: add apktool build.gradle changes
-
----
- dexlib2/accessorTestGenerator/build.gradle |  2 +-
- dexlib2/build.gradle                       | 13 +------------
- 2 files changed, 2 insertions(+), 13 deletions(-)
-
-diff --git a/dexlib2/accessorTestGenerator/build.gradle b/dexlib2/accessorTestGenerator/build.gradle
-index e50bdc0..e242ae0 100644
---- a/dexlib2/accessorTestGenerator/build.gradle
-+++ b/dexlib2/accessorTestGenerator/build.gradle
-@@ -30,7 +30,7 @@
-  */
- 
- dependencies {
--    compile project(':util')
-+    compile project(':brut.apktool.smali:util')
-     compile 'com.google.code.findbugs:jsr305:1.3.9'
-     compile 'com.google.guava:guava:13.0.1'
-     compile 'org.antlr:ST4:4.0.7'
-diff --git a/dexlib2/build.gradle b/dexlib2/build.gradle
-index 8fbe5ff..82b71b5 100644
---- a/dexlib2/build.gradle
-+++ b/dexlib2/build.gradle
-@@ -46,7 +46,7 @@ configurations {
- }
- 
- dependencies {
--    compile project(':util')
-+    compile project(':brut.apktool.smali:util')
-     compile depends.findbugs
-     compile depends.guava
- 
-@@ -91,15 +91,4 @@ task generateAccessorTestDex(type: JavaExec, dependsOn: compileAccessorTestJava)
-     args '--no-strict'
-     args "--output=${outputDex}"
-     args sourceSets.accessorTest.output.classesDir
--}
--
--uploadArchives {
--    repositories.mavenDeployer {
--        pom.project {
--            description 'dexlib2 is a library for reading/modifying/writing Android dex files'
--            scm {
--                url 'https://github.com/JesusFreke/smali/tree/master/dexlib2'
--            }
--        }
--    }
- }
-\ No newline at end of file
--- 
-2.1.4

gradle/smali-patches/006-smali-buildgradle.patch

@@ -1,69 +0,0 @@
-From b23132a5a7b5bc7f6d267e621194565a607cab85 Mon Sep 17 00:00:00 2001
-From: Connor Tumbleson <connor.tumbleson@gmail.com>
-Date: Wed, 14 Oct 2015 06:17:39 -0500
-Subject: smali: add apktool build.gradle changes
-
----
- smali/build.gradle | 26 ++------------------------
- 1 file changed, 2 insertions(+), 24 deletions(-)
-
-diff --git a/smali/build.gradle b/smali/build.gradle
-index 0e5cbf2..d387c7f 100644
---- a/smali/build.gradle
-+++ b/smali/build.gradle
-@@ -68,8 +68,8 @@ idea {
- }
- 
- dependencies {
--    compile project(':util')
--    compile project(':dexlib2')
-+    compile project(':brut.apktool.smali:util')
-+    compile project(':brut.apktool.smali:dexlib2')
-     compile depends.antlr_runtime
-     compile depends.stringtemplate
-     compile depends.commons_cli
-@@ -83,11 +83,6 @@ dependencies {
- processResources.inputs.property('version', version)
- processResources.expand('version': version)
- 
--// This is the jar that gets uploaded to maven
--jar {
--    baseName = 'maven'
--}
--
- // Build a separate jar that contains all dependencies
- task fatJar(type: Jar, dependsOn: jar) {
-     from sourceSets.main.output
-@@ -96,12 +91,6 @@ task fatJar(type: Jar, dependsOn: jar) {
-     manifest {
-         attributes('Main-Class': 'org.jf.smali.main')
-     }
--
--    doLast {
--        if (!System.getProperty('os.name').toLowerCase().contains('windows')) {
--            ant.symlink(link: file("${destinationDir}/smali.jar"), resource: archivePath, overwrite: true)
--        }
--    }
- }
- tasks.getByPath('build').dependsOn(fatJar)
- 
-@@ -117,17 +106,6 @@ generateJFlexSource {
-     outputDirectory = new File(outputDirectory, 'org/jf/smali')
- }
- 
--uploadArchives {
--    repositories.mavenDeployer {
--        pom.project {
--            description 'smali is an assembler for dalvik bytecode'
--            scm {
--                url 'https://github.com/JesusFreke/smali/tree/master/smali'
--            }
--        }
--    }
--}
--
- task proguard(type: proguard.gradle.ProGuardTask, dependsOn: fatJar) {
-     def outFile = fatJar.destinationDir.getPath() + '/' + fatJar.baseName + '-' +
-             fatJar.version + '-small' + '.' + fatJar.extension
--- 
-2.1.4

gradle/smali-patches/007-util-buildgradle.patch

@@ -1,32 +0,0 @@
-From cee3b393b9477db6047e489bc0e4ba89c687f723 Mon Sep 17 00:00:00 2001
-From: Connor Tumbleson <connor.tumbleson@gmail.com>
-Date: Wed, 14 Oct 2015 06:18:02 -0500
-Subject: util: add apktool build.gradle changes
-
----
- util/build.gradle | 11 -----------
- 1 file changed, 11 deletions(-)
-
-diff --git a/util/build.gradle b/util/build.gradle
-index 407ef71..6dbd7a0 100644
---- a/util/build.gradle
-+++ b/util/build.gradle
-@@ -34,15 +34,4 @@ dependencies {
-     compile depends.findbugs
-     compile depends.guava
-     testCompile depends.junit
--}
--
--uploadArchives {
--    repositories.mavenDeployer {
--        pom.project {
--            description 'This library contains random utilities used by smali/baksmali/dexlib2'
--            scm {
--                url 'https://github.com/JesusFreke/smali/tree/master/util'
--            }
--        }
--    }
- }
-\ No newline at end of file
--- 
-2.1.4

settings.gradle

@@ -1,10 +1,5 @@
 include 'brut.j.common',
         'brut.j.util',
         'brut.j.dir',
-        'brut.apktool.smali:util',
-        'brut.apktool.smali:dexlib2',
-        'brut.apktool.smali:baksmali',
-        'brut.apktool.smali:smali',
-        'brut.apktool.smali:dexlib2:accessorTestGenerator',
         'brut.apktool:apktool-lib',
         'brut.apktool:apktool-cli'

smali

@@ -1 +0,0 @@
-Subproject commit 398630dde5a2370ead0f3ca43c59d896e6fdab60