diff --git a/revanced-cli/src/main/kotlin/app/revanced/cli/command/PatchCommand.kt b/revanced-cli/src/main/kotlin/app/revanced/cli/command/PatchCommand.kt
index 8cec83c..97dc6a1 100644
--- a/revanced-cli/src/main/kotlin/app/revanced/cli/command/PatchCommand.kt
+++ b/revanced-cli/src/main/kotlin/app/revanced/cli/command/PatchCommand.kt
@@ -208,10 +208,10 @@ internal object PatchCommand : Runnable {
 
             // region Save
 
-            val aligned = resourceCachePath.resolve(apk.name)
-            ApkUtils.align(apk, aligned, patcherResult)
+            val tempFile = resourceCachePath.resolve(apk.name)
+            ApkUtils.copyAligned(apk, tempFile, patcherResult)
             if (!mount) ApkUtils.sign(
-                aligned,
+                tempFile,
                 outputFilePath,
                 SigningOptions(
                     commonName,
diff --git a/revanced-lib/api/revanced-lib.api b/revanced-lib/api/revanced-lib.api
index 9f1267d..8470bad 100644
--- a/revanced-lib/api/revanced-lib.api
+++ b/revanced-lib/api/revanced-lib.api
@@ -1,6 +1,6 @@
 public final class app/revanced/lib/ApkUtils {
 	public static final field INSTANCE Lapp/revanced/lib/ApkUtils;
-	public final fun align (Ljava/io/File;Ljava/io/File;Lapp/revanced/patcher/PatcherResult;)V
+	public final fun copyAligned (Ljava/io/File;Ljava/io/File;Lapp/revanced/patcher/PatcherResult;)V
 	public final fun sign (Ljava/io/File;Ljava/io/File;Lapp/revanced/lib/signing/SigningOptions;)V
 }
 
@@ -98,7 +98,7 @@ public final class app/revanced/lib/signing/SigningOptions {
 
 public final class app/revanced/lib/zip/ZipAligner {
 	public static final field INSTANCE Lapp/revanced/lib/zip/ZipAligner;
-	public final fun getEntryAlignment (Lapp/revanced/lib/zip/structures/ZipEntry;)Ljava/lang/Integer;
+	public final fun getApkZipEntryAlignment ()Lkotlin/jvm/functions/Function1;
 }
 
 public final class app/revanced/lib/zip/ZipFile : java/io/Closeable {
diff --git a/revanced-lib/src/main/kotlin/app/revanced/lib/ApkUtils.kt b/revanced-lib/src/main/kotlin/app/revanced/lib/ApkUtils.kt
index 247a4f9..6de8201 100644
--- a/revanced-lib/src/main/kotlin/app/revanced/lib/ApkUtils.kt
+++ b/revanced-lib/src/main/kotlin/app/revanced/lib/ApkUtils.kt
@@ -8,6 +8,7 @@ import app.revanced.lib.zip.structures.ZipEntry
 import app.revanced.patcher.PatcherResult
 import java.io.File
 import java.util.logging.Logger
+import kotlin.io.path.deleteIfExists
 
 @Suppress("MemberVisibilityCanBePrivate", "unused")
 object ApkUtils {
@@ -20,9 +21,11 @@ object ApkUtils {
      * @param outputFile The apk to write the new entries to.
      * @param patchedEntriesSource The result of the patcher to add the patched dex files and resources.
      */
-    fun align(apkFile: File, outputFile: File, patchedEntriesSource: PatcherResult) {
+    fun copyAligned(apkFile: File, outputFile: File, patchedEntriesSource: PatcherResult) {
         logger.info("Aligning ${apkFile.name}")
 
+        outputFile.toPath().deleteIfExists()
+
         ZipFile(outputFile).use { file ->
             patchedEntriesSource.dexFiles.forEach {
                 file.addEntryCompressData(