rocksdb/table
Peter Dillinger f059c7d9b9 New Bloom filter implementation for full and partitioned filters (#6007)
Summary:
Adds an improved, replacement Bloom filter implementation (FastLocalBloom) for full and partitioned filters in the block-based table. This replacement is faster and more accurate, especially for high bits per key or millions of keys in a single filter.

Speed

The improved speed, at least on recent x86_64, comes from
* Using fastrange instead of modulo (%)
* Using our new hash function (XXH3 preview, added in a previous commit), which is much faster for large keys and only *slightly* slower on keys around 12 bytes if hashing the same size many thousands of times in a row.
* Optimizing the Bloom filter queries with AVX2 SIMD operations. (Added AVX2 to the USE_SSE=1 build.) Careful design was required to support (a) SIMD-optimized queries, (b) compatible non-SIMD code that's simple and efficient, (c) flexible choice of number of probes, and (d) essentially maximized accuracy for a cache-local Bloom filter. Probes are made eight at a time, so any number of probes up to 8 is the same speed, then up to 16, etc.
* Prefetching cache lines when building the filter. Although this optimization could be applied to the old structure as well, it seems to balance out the small added cost of accumulating 64 bit hashes for adding to the filter rather than 32 bit hashes.

Here's nominal speed data from filter_bench (200MB in filters, about 10k keys each, 10 bits filter data / key, 6 probes, avg key size 24 bytes, includes hashing time) on Skylake DE (relatively low clock speed):

$ ./filter_bench -quick -impl=2 -net_includes_hashing # New Bloom filter
Build avg ns/key: 47.7135
Mixed inside/outside queries...
  Single filter net ns/op: 26.2825
  Random filter net ns/op: 150.459
    Average FP rate %: 0.954651
$ ./filter_bench -quick -impl=0 -net_includes_hashing # Old Bloom filter
Build avg ns/key: 47.2245
Mixed inside/outside queries...
  Single filter net ns/op: 63.2978
  Random filter net ns/op: 188.038
    Average FP rate %: 1.13823

Similar build time but dramatically faster query times on hot data (63 ns to 26 ns), and somewhat faster on stale data (188 ns to 150 ns). Performance differences on batched and skewed query loads are between these extremes as expected.

The only other interesting thing about speed is "inside" (query key was added to filter) vs. "outside" (query key was not added to filter) query times. The non-SIMD implementations are substantially slower when most queries are "outside" vs. "inside". This goes against what one might expect or would have observed years ago, as "outside" queries only need about two probes on average, due to short-circuiting, while "inside" always have num_probes (say 6). The problem is probably the nastily unpredictable branch. The SIMD implementation has few branches (very predictable) and has pretty consistent running time regardless of query outcome.

Accuracy

The generally improved accuracy (re: Issue https://github.com/facebook/rocksdb/issues/5857) comes from a better design for probing indices
within a cache line (re: Issue https://github.com/facebook/rocksdb/issues/4120) and improved accuracy for millions of keys in a single filter from using a 64-bit hash function (XXH3p). Design details in code comments.

Accuracy data (generalizes, except old impl gets worse with millions of keys):
Memory bits per key: FP rate percent old impl -> FP rate percent new impl
6: 5.70953 -> 5.69888
8: 2.45766 -> 2.29709
10: 1.13977 -> 0.959254
12: 0.662498 -> 0.411593
16: 0.353023 -> 0.0873754
24: 0.261552 -> 0.0060971
50: 0.225453 -> ~0.00003 (less than 1 in a million queries are FP)

Fixes https://github.com/facebook/rocksdb/issues/5857
Fixes https://github.com/facebook/rocksdb/issues/4120

Unlike the old implementation, this implementation has a fixed cache line size (64 bytes). At 10 bits per key, the accuracy of this new implementation is very close to the old implementation with 128-byte cache line size. If there's sufficient demand, this implementation could be generalized.

Compatibility

Although old releases would see the new structure as corrupt filter data and read the table as if there's no filter, we've decided only to enable the new Bloom filter with new format_version=5. This provides a smooth path for automatic adoption over time, with an option for early opt-in.
Pull Request resolved: https://github.com/facebook/rocksdb/pull/6007

Test Plan: filter_bench has been used thoroughly to validate speed, accuracy, and correctness. Unit tests have been carefully updated to exercise new and old implementations, as well as the logic to select an implementation based on context (format_version).

Differential Revision: D18294749

Pulled By: pdillinger

fbshipit-source-id: d44c9db3696e4d0a17caaec47075b7755c262c5f
2019-11-13 16:44:01 -08:00
..
adaptive Organizing rocksdb/table directory by format 2019-05-30 14:51:11 -07:00
block_based New Bloom filter implementation for full and partitioned filters (#6007) 2019-11-13 16:44:01 -08:00
cuckoo Apply formatter to recent 200+ commits. (#5830) 2019-09-20 12:04:26 -07:00
plain Fix memory leak on error opening PlainTable (#5951) 2019-10-21 16:53:06 -07:00
block_fetcher.cc Divide file_reader_writer.h and .cc (#5803) 2019-09-16 10:33:51 -07:00
block_fetcher.h Combine the read-ahead logic for user reads and compaction reads (#5431) 2019-06-19 14:10:46 -07:00
cleanable_test.cc Move test related files under util/ to test_util/ (#5377) 2019-05-30 11:25:51 -07:00
format.cc Add new persistent 64-bit hash (#5984) 2019-10-31 16:36:35 -07:00
format.h New Bloom filter implementation for full and partitioned filters (#6007) 2019-11-13 16:44:01 -08:00
get_context.cc New API to get all merge operands for a Key (#5604) 2019-08-06 14:26:44 -07:00
get_context.h Fix local includes 2019-08-22 16:21:47 -07:00
internal_iterator.h Revert "Merging iterator to avoid child iterator reseek for some cases (#5286)" (#5871) 2019-10-01 11:22:41 -07:00
iter_heap.h Make InternalKeyComparator final and directly use it in merging iterator 2017-09-11 12:04:21 -07:00
iterator_wrapper.h Revert "Merging iterator to avoid child iterator reseek for some cases (#5286)" (#5871) 2019-10-01 11:22:41 -07:00
iterator.cc Add an option to put first key of each sst block in the index (#5289) 2019-06-24 20:54:04 -07:00
merger_test.cc Move test related files under util/ to test_util/ (#5377) 2019-05-30 11:25:51 -07:00
merging_iterator.cc Fix a timer bug in MergingIterator::Seek() caused by #5871 (#5874) 2019-10-01 19:26:18 -07:00
merging_iterator.h Index value delta encoding (#3983) 2018-08-09 16:58:40 -07:00
meta_blocks.cc Divide file_reader_writer.h and .cc (#5803) 2019-09-16 10:33:51 -07:00
meta_blocks.h Fix comment of function NotifyCollectTableCollectorsOnFinish (#5738) 2019-08-29 10:57:01 -07:00
mock_table.cc Apply formatter to recent 200+ commits. (#5830) 2019-09-20 12:04:26 -07:00
mock_table.h Apply formatter to recent 200+ commits. (#5830) 2019-09-20 12:04:26 -07:00
multiget_context.h Batched MultiGet API for multiple column families (#5816) 2019-11-12 13:52:55 -08:00
persistent_cache_helper.cc Organizing rocksdb/table directory by format 2019-05-30 14:51:11 -07:00
persistent_cache_helper.h Change RocksDB License 2017-07-15 16:11:23 -07:00
persistent_cache_options.h Change RocksDB License 2017-07-15 16:11:23 -07:00
scoped_arena_iterator.h Change RocksDB License 2017-07-15 16:11:23 -07:00
sst_file_reader_test.cc simplify include directive involving inttypes (#5402) 2019-06-06 13:56:07 -07:00
sst_file_reader.cc Divide file_reader_writer.h and .cc (#5803) 2019-09-16 10:33:51 -07:00
sst_file_writer_collectors.h Fix SstFileReader not able to open ingested file (#5097) 2019-03-26 10:25:18 -07:00
sst_file_writer.cc Divide file_reader_writer.h and .cc (#5803) 2019-09-16 10:33:51 -07:00
table_builder.h Divide file_reader_writer.h and .cc (#5803) 2019-09-16 10:33:51 -07:00
table_properties_internal.h Index value delta encoding (#3983) 2018-08-09 16:58:40 -07:00
table_properties.cc Organizing rocksdb/table directory by format 2019-05-30 14:51:11 -07:00
table_reader_bench.cc Divide file_reader_writer.h and .cc (#5803) 2019-09-16 10:33:51 -07:00
table_reader_caller.h Add more callers for table reader. (#5454) 2019-06-20 14:31:48 -07:00
table_reader.h Apply formatter to recent 200+ commits. (#5830) 2019-09-20 12:04:26 -07:00
table_test.cc Charge block cache for cache internal usage (#5797) 2019-09-16 15:26:21 -07:00
two_level_iterator.cc Add an option to put first key of each sst block in the index (#5289) 2019-06-24 20:54:04 -07:00
two_level_iterator.h Add an option to put first key of each sst block in the index (#5289) 2019-06-24 20:54:04 -07:00